泛素化介导的蛋白质降解课件.ppt
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1、The Nobel Prize in Chemistry,2004“for the discovery of ubiquitin-mediated protein degradation”Avram HershkoIrwin RoseAaron CiechanoverWolf,D.H.“Proteasomes:The World of Regulatory Proteolysis”细胞周期和细胞分裂、分化发育的调节细胞对外环境的应激反应的调节神经网络的形态发生细胞表面受体和离子通道的下调DNA修复免疫和感染反应的调节细胞器的生物生成Functions of Ubiquitination-med
2、iated protein degradationCell Cycle by UbiquitinationE2FMSG1G2DK4/6EK2p21E2FAK2BCDC2p53securinSLBPRbDifferent modification states of p53 and MDM2Daniela Hoeller et al.Ubiquitin and ubiquitin-like proteins in cancer pathogenesis.Nat.Rev.Cancer,2006,6,776NF-B signalling pathwayscanonical pathwayNon-ca
3、nonical pathwayUbiquitinHuman Ub:MQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGYeast Ub:MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGLys-48Gly-76 Ubiquitin-proteasome system(UPS)Daniela Hoeller et al.Nat.Rev.Cancer,2006,6,776Protein Ubiqui
4、tinationRING E3HECT E3Functions of the Ub system Non-proteolytic(mono-Ub or K63 Ub chain)DNA repair,transcription,kinase activation.Proteolytic(K48 or K29 linked Ub chains)1)concentration control:key regulators(e.g.p53,cyclins,HIF)2)protein quality control:misfolded or damaged proteins(e.g.CFTR,prio
5、n,huntingtin)Different types of Lysine modifications(Ubiquitination and ubiquitin-like modifications)Daniela Hoeller et al.Nat.Rev.Cancer,2006,6,776Ubiquitin and ubiquitin-like proteinsUbiquitin-mediated ProteolysisE1Ub-S-E3 cell cycle signal transduction antigen processing tumor suppressionmisfolde
6、d proteinscyclinsCDK inhibitorsIk kBa atranscriptionc-junc-fosp53b b-cateninoncogenesmyc?virusesbacterialmanyE2Ub-S-substratesUb Ub Ub Ub Ub.Lys-48 C terminusCombinatorial nature of UPSAdaptors(a few)Rad23E3s:next wave of drug targetsProteasome inhibitor Velcade:multiple myeloma UPS:targets in anti-
7、cancer therapyE3s:determine substrate specificity,better targetsCancer,Huntingtons disease,spinocerebellar ataxias,Pagets disease of bone,AIDS-related cancer,muscle wasting,cystic fibrosis,Alzheimers disease,Parkinsons disease,hypertension,etc.Two major scientific issues central to our understanding
8、s of E3 ligase1.Mechanisms controlling the assembly and activity of E3 ligases2.Molecular nature of E3 ligases and their substratesTwo families of E3 ubiquitin ligases-S-E2substrateE3?UbUbUbUbUbUbHECT family E3(40)E6APE2substrateUbUbUbUbUbUbHECTRING family E3(1000s)CullinROCE2adaptorsubstrateUbUbUbU
9、bUbUbMDM2E2p53UbUbUbUbUbUbRINGRING fingerZinc fingerC1C2X2H3X2X2C4C5C6C7C8Zn+Zn+X17X17X2X5C1C2C5C6C6C7X2C/H4C/H3C7C8X2X2X2X(9-27)X(1-3)X(4-48)Zn+Zn+RING:Really Interesting New GeneRING Finger GenesRING Finger GenesC3H2C3(RING-H2)ROC1 CAICRNHIMD LCIECQA NQASATSE ECTVAWG VCNHAFHFHCISRWLKTRQ-V CPLD cel
10、l cycle controlROC2 CAICRVQVMD ACLRCQA EN-KQE DCVVVWG ECNHSFHNCCMSLWVKQNN-R CPLC unknownAPC11 CGICRMAFNG CCPDCKV P-GD DCPLVWG QCSHCFHMHCILKWLHAQQVQQH CPMC mitotsisPRAJA1 CPICCSEYVK-GEVATELPCHHYFHKPCVSIWLQKSG-T CPVC unknown PARKIN CITCTDVRSP-VLVFQCNSRHVICLDCFHLYCVTRLNDRQ 11P CVAGC parkison diseaseC3H
11、C4(RING-HC)c-Cbl CKICAENDKD-VKIEP CGHLMCTSCLTSWQE SEG-QG CPFC signal transductionSiah CPVCFDYVLP-PILQCQAGHLVCNQCRQKL-SC CPTC developmental signalingBRCA1 CPICLELIKE-PVSTKCDHIFCKFCMLKLLNQKKGPSQ CPLC tumor suppressionBARD1 CSRCANILKE-PVCLGGCEHIFCSGCISDCVGS-G CPVC tumor suppressionMURF CPICLEMFSK-PVVIL
12、PCQHNLCRKCANDVFQ18RFR CPSC signal transductionPML CQQCQAEA KC-PKLLPCLHTLCSGCLEASGM-Q CPIC transcription IAP1 CKVCMDKEVS-IVFIPCGHLVVCKDCAPSLRK-CPIC apoptosisIAP2 CKVCMDKEVS-VVFIPCGHLVVCQECAPSLRK-CPIC apoptosisIAP3 CKICMDRNIA-IVFVPCGHLVTCKQCAEAVDK-CPMC apoptosisC2H2C4HDM2 CVICQGRP KN-GCIVHGKTG HLMACFT
13、CAKKLKKRNK-P CPVC control p53Yeast:39Worm:154Fly:135Human:350Arabidopsis:490How Many E3 Ligases?Proteases:550Kinases:520Phosphatses:150DNA polymerases:16E1:16E2:53E3:Cullin-ROC complexes300-500RING proteins450HECT proteins40U-box proteins10-20Ubl ligases?1000Single-subunit RING type E3:Mdm2p53 bindi
14、ngZn1 19 102305 322438 478 491RINGNESNLSNoLS181-185 191-205 464-471Ubc940-59Smurf175-114 p300102-222 ARF210-244 acidic221 274L5/L11/L26284-374 RB273-321 Gankyrin412-437 Mdm2/MdmX438-491 Mdm2*AktS166/S186ATMS395MDM2 structure and interacting proteinsMDM2 ubiquitinates p53MDM2-1+2+3-4+5+6poly ubiquiti
15、nated p53UbcH5+-+-Honda et al.(1997)FEBS Letter 420:25 p53 can be activated by multiple stressesp53MDM2Oncogenic insultsARFDNA damageKinases(ATM,Chk1/2)Normal cellTumor cellMultiple-subunits RING type E3:Cullin-Roc-based ligase(CRL)complexE3 Ubiquitin LigaseUb-S-E2substrateE3UbUbUbUbE3 Ubiquitin Lig
16、aseUb-S-E2substrateE3?UbUbUbUbE3 Ubiquitin LigaseUb-S-E2substrateE3?UbUbUbUbRING Cullin binds ROCCullin 1ROCHuman Cullins and Cullin-related proteinsKipreos et al.(1996)Cell 85:829CUL5780APC2822Nd8CUL1776CUL2745CUL3768CUL4A759CUL4B717ROCPARC,CUL7APC:anaphase-promoting complexfunction to mediate mito
17、sis progressionresponsible for degradation of various mitotic proteins,including cylins and seurinsAPC11 is a RING finger proteinRING fingerZinc fingerC1C2X2H3X2X2C4C5C6C7C8Zn+Zn+X17X17X2X5C1C2C5C6C6C7X2C/H4C/H3C7C8X2X2X2X(9-27)X(1-3)X(4-48)Zn+Zn+RING:Really Interesting New GeneSkp1 brings F-box pro
18、tein to Cul1Bai et al.(1996)Cell 86:263-274Cullin 1Skp1F-boxROC1E2UbCullin 1Skp1F-boxROC1E2UbsubstrateNdF-box proteins:substrate receptorsF-box proteinsWLOCDC4FE2UbCullin 1Roc1Skp1UbUbUbUbUbUbUbiquitination of CDK inhibitor SIC1 by SCFCDC4-ROC ligasePPSIC1SCF-ROC E3 ubiquitin ligaseZheng et al.(2002
19、)Nature 416:703Rbx1/Roc1Cul1 CTDCul1Skp1Skp2 F-boxRepeat 1Repeat 2Repeat 3NNCCCNCSCF-ROC ligasesE2UbCullin 1Roc1UbUbUbUbUbUbUbUbUbUbUbUbUbUbUbUbUbUbSkp1Skp2p27FSkp1 Fbp 4Substrate 4FSkp1 Fbp 5Substrate 5FSkp1 Fbp 6Substrate 6FSkp1 Fbp 7Substrate 7FSkp1 Fbp 63Substrate 50Fb b-TrcPIk kBa aF Fbp 3Subst
20、rate 3FHuman Cullins and Cullin-related proteinsKipreos et al.(1996)Cell 85:829CUL5780APC2822Nd8CUL1SKP1776CUL2745CUL3768CUL4A759CUL4B717?ROCUbUbUbUbUbUbUbUbUbUbUbUbBCR(BTB-CUL3-ROC)E3 ligasesCullin 3Roc1E2UbUbUbUbUbUbUbBTB4Substrate 4BTBBTB5Substrate 5BTBBTB6Substrate 6BTBBTB5Substrate 5BTBBTB6Subs
21、trate 6BTBBTB200Substrate 200BTBMEI-1MEL26BTBNRF2Keap1BTBSubstrate3BTB3BTBCullin4:DDB1-DCAF-ROC ligasesE2UbCullin 4Roc1UbUbUbUbUbUbUbUbUbUbUbUbUbUbUbUbUbUbDDB1DDB2XPCWDDDB1 DCAF 4Substrate 4WDDDB1 DCAF 5Substrate 5WDDDB1 DCAF 6Substrate 6WDDDB1 DCAF 7Substrate 7WDDDB1 DCAF 60Substrate 60WDCSACSBWD D
22、CAF 3Substrate 3WDDDB1:UV-damaged DNA binding protein1DCAFs:DDB1-CUL4 associated factorsHow many cullin ligases?CUL1:63 F-box proteins(Skp1 as adaptor)CUL2/5:40 VHL/SOCS proteins(Elongin B/C as adaptor)CUL3:205 BTB proteins(BTB themselves as adaptors)CUL4A:60 DWD/WD40/DCAF proteins(DDB1 as adaptor)C
23、UL4B:?CUL7:?PARC:?1.Cullin:scaffold proteins2.ROC:RING finger,link cullin with E23.Skp1,Elongin B/C,BTB,DDB1:adaptor,link cullin with substrate receptor4.F-box,VHL,SOCS,BTB,DWD proteins:substrate receptors,link adaptor to substrate5.Substrate:E3 targets(largely unknown,so far,only 20 have been ident
24、ified)Pattern of Cullin-ROC ligases assembly and substrate recruitmentCullin-ROC ligases vs.built-in RING ligases MDM2E2Ubp53RINGUbUbUbUbUbCUL3ROCE2UbBTBsubstrateUbUbUbUbUbCUL1ROCE2UbSKP1FPPsubstrateUbUbUbUbUbHECT domain type E3Family of HECT type E3 ubiquitin ligasesHERC family:6 members,HERC1-6Ned
25、d4 family:9 membersSingle HECT E3s:E6AP,EDD,ARF-BP1/HECTH9HERC:HECT and RCC1-like domainRLD:RCC1-like domainNedd4:neural precursor cells-expressed developmentally downregulated 4Huge MW(80500 kDa),difficult to studyMore than 500 kDa100120 kDaARF-BP1/MuleNedd4 family E3sFunction of the catalytic acti
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